BIOST 2055
Introductory high-throughput genomic data analysis I: data mining and applications
Spring 2012

Class location: Room A622, Crabtree Hall
Class schedule: Wednesday, Friday 9:30-10:45AM
Course homepage: http://tsenglab.biostat.pitt.edu/biost2055/2012
Lab location: 3073 (3rd floor), Department of Computational Biology, BST3, 3501 Fifth Avenue. (BST3 is a secured building. Bring your Pitt ID to enter for the five lab sessions.)

Lecturer: George C. Tseng
Homepage: http://www.pitt.edu/~ctseng
Office hour: by appointment
Office: 303 Parran Hall
Email address: ctseng@pitt.edu
Telephone number: 412-624-5318

TA: Shaowu Tang


syllabus
Lecture Slides
01/06 intro_Bio

01/11 intro_Array_NGS

01/13 data_preprocessing

01/18 DE_analysis

01/20 Lab1, Homework_1

01/25, 02/01 supervised machine learning I, supervised machine learning II, supervised machine learning theorem

02/03 Lab2, Homework_2

02/08 dimension reduction

02/10, 02/15 cluster analysis I, cluster analysis II

02/17 Lab3, HW3

02/22 pathway analysis and motif finding

02/24 network analysis

02/29 genomic meta-analysis

03/02 Lab4, HW4

03/14 CNV (guest speaker, Eleanor Feingold)

03/16, 3/23 NGS I, NGS II (guest speaker, Wei Chen)

03/21 GWAS (guest speaker, Eleanor Feingold)

03/28 HMM and change-point model

03/30, 04/04 gene regulatioin, miRNA regulation (guest speaker, Takis Benos)

04/06, 04/11 DNA-protein interaction, Epigenomics (guest speaker, Xinghua Lu)

04/13 genomic integrative analysis