|
2023/04/28
|
Danyang Li
|
Paper review: Temporal modeling using single-cell transcriptomics
|
|
2023/04/07
|
Jian Zou
|
Dissertation defense: Clustering, Biomarker and Cancer Model Selection Using Omics Data
|
|
2023/03/31
|
Wei Zong
|
Dissertation defense: Statistical Modeling for High-Dimensional Omics Studies for Congruenc, Heterogeneity and Clustering
|
|
2023/03/31
|
Wei Zong
|
Dissertation defense: Statistical Modeling for High-Dimensional Omics Studies for Congruenc, Heterogeneity and Clustering
|
|
2023/03/24
|
Yusi Fang
|
Dissertation defense: Methods for combining frequent or sparse signals in omics applications
|
|
2023/03/17
|
Rick Chang
|
Workshop rehearsal: Multi-Omics Causal Mediation Analysis and Single Cell Multi-Omics Analysis.
|
|
2023/03/10
|
Wenjia Wang
|
Workshop rehearsal: Overview of Multi-Omics Data Analysis and Horizontal Data Integration.
|
|
2023/03/03
|
Jian Zou
|
Lessons Learned From the Bevacizumab Experience.
|
|
2023/02/24
|
Yusi Fang
|
Fisher ensemble method for combining p-values with independent and non-sparse signals.
|
|
2023/02/17
|
Xiangning Xue
|
Literature review of network inference using biological time-course data.
|
|
2023/02/10
|
Zong Wei
|
Model-based Multiple Clustering Algorithm for High-dimensional Omics Data.
|
|
2023/02/03
|
Rick Chang
|
Paper review: Large-Scale Hypothesis Testing for Causal Mediation Effects with Applications in Genome-wide Epigenetic Studies.
|
|
2022/12/02
|
Michael Gorczyca
|
Paper review: Circadian rhythm detection methods and their utility.
|
|
2022/11/09
|
Wenjia Wang
|
Paper review: Smaller p-values via indirect information.
|
|
2022/11/03
|
Xiangning Xue
|
CircaBayes: a Bayesian model for circadian analysis.
|
|
2022/10/28
|
Wei Zong
|
Dissertation proposal: Statistical modeling for high-dimensional omics studies for congruence, heterogeneity and clustering.
|
|
2022/10/21
|
Jian Zou
|
Dissertation proposal: Various statistical modeling and learning issues in omics data analysis.
|
|
2022/10/14
|
Yusi Fang
|
Dissertation proposal: Methods for combining frequent or sparse signals in omics applications.
|
|
2022/09/30
|
Yusi Fang
|
Optimal p-value combination for detecting dense/sparse signals
|
|
2022/09/23
|
Rick Chang
|
PECMA: Partial sum method on high-dimensional causal mediation analysis using in omics study
|
|
2022/09/16
|
Michael Gorczyca
|
Estimating internal biological clock time with applications in precision medicine.
|
|
2022/09/09
|
Jian Zou
|
Transcriptomic congruence and selection of representative cancer models toward precision medicine.
|
|
2022/09/02
|
Wenjia Wang
|
Drug response prediction with baseline transcriptomic data.
|
|
2022/04/22
|
Wenjia Wang
|
Higher criticism for large-scale inference, especially for rare and weak effects
|
|
2022/04/15
|
Jian Zou
|
Part mutual information for quantifying direct associations in networks
|
|
2022/04/01
|
Yujia Li
|
Dissertation defense: Cluster and association analysis for high dimensional omics studies.
|
|
2022/03/25
|
Yusi Fang
|
Robust aggregation of p-values with unknown dependency structure in SNP-set test
|
|
2022/03/18
|
Wenjia Wang
|
Importance sampling and null distribution computation for High Criticism test.
|
|
2022/03/11
|
Wei Zong
|
Model-based multiple clustering project.
|
|
2022/02/25
|
Jian Zou
|
Literature review: Networ-based approaches for multi-omics integration.
|
|
2022/02/18
|
Xiangning Xue
|
Paper review: Gaussian graphical model for subgroup clustering.
|
|
2022/02/11
|
Yusi Fang
|
Issues in combining finite number of p-values revisited.
|
|
2022/02/04
|
Yujia Li
|
Outcome-guided clustering using weighted joint likelihood approach.
|
|
2022/01/28
|
Wenjia Wang
|
Paper review: Mixed=effect Gaussian processes for multi-task model.
|
|
2022/01/21
|
Wei Zong
|
Paper review: Generation of alternative clustering approach.
|
|
2022/1/14
|
Jian Zou
|
Congruence between cell lines and tumors.
|
|
2021/12/10
|
Xiangning Xue
|
Paper review: Selective sequential model selection.
|
|
2021/11/19
|
Yusi Fang
|
Optimal p-value combination for frequentist signals aggregation.
|
|
2021/11/05
|
Wei Zong
|
Literature review: Multiple clustering solutions.
|
|
2021/10/29
|
Wenjia Wang
|
Importance sampling and null distribution computation for Higher Criticism and Berk-Jones statistics.
|
|
2021/10/22
|
Jian Zou
|
Cluster size constrained clustering.
|
|
2021/10/01
|
Xiangning Xue
|
An integrative circadian model for multiple groups.
|
|
2021/09/24
|
Yusi Fang
|
Paper review: Confidence intervals for low dimensional parameters in high dimensional linear models.
|
|
2021/09/17
|
Yujia Li
|
Association analysis between gene expression and multiple correlated phenotypes in complex diseases.
|
|
2021/09/10
|
Wei Zong
|
CircaPower: Experimental design and power calculation in omics circadian data.
|
|
2021/04/20
|
Peng Liu
|
An overview of recent advances in single cell sequencing technology and statistical methods
|
|
2021/04/13
|
Wenjia Wang
|
A review of A Multiple-Testing Procedure for High-Dimensional Mediation Hypotheses
|
|
2021/03/30
|
Yusi Fang
|
A review of SCA: A New Basis for Sparse PCA
|
|
2021/03/16
|
Yujia Li
|
Revisit joint modelling of survival and longitudinal data
|
|
2021/03/09
|
Xiangning Xue
|
A review of Benchmarking of cell type deconvolution pipelines for transcriptomics data
|
|
2021/03/02
|
Jian Zou
|
Resemblance analysis between cell lines and tumors
|
|
2021/02/16
|
Wei Zong
|
A review of Discovering Biology in Periodic Data through Phase Set Enrichment Analysis (PSEA)
|
|
2021/02/09
|
Yusi Fang
|
A review of GSVA: gene set variation analysis for microarray and RNA-Seq data
|
|
2021/02/02
|
Yujia Li
|
Applicatio of AW Fisher on multivariate outcome analysis.
|
|
2021/01/26
|
Xiangning Xue
|
A review of Biomarker detection and categorization in ribonucleic acid sequencing meta-analysis using Bayesian hierarchical models
|
|
2021/01/19
|
Wei Zong
|
CAMO: congruence analysis of model organisms
|
|
2021/01/12
|
Jian Zou
|
Interpretation of deep learning in genomics and epigenomics
|
|
2020/12/08
|
Peng Liu
|
Semi-supervised Clustering: co-training, self-training, generative models and semi-supervised SVM
|
|
2020/12/01
|
Yusi Fang
|
Combining p-values for weak, sparse and heterogeneous signals
|
|
2020/11/17
|
Yujia Li
|
A sparse negative binomial clustering algorithm for RNA-seq data using lasso and fused lasso penalty
|
|
2020/11/10
|
Xiangning Xue
|
Death time prediction in circadian analysis - a review of ZeitZeiger
|
|
2020/11/03
|
Wei Zong
|
A review joint modelling of longitudinal and survival data
|
|
2020/10/27
|
Jian Zou
|
A review common pipelines for single cell RNA-Seq data
|
|
2020/10/13
|
Yusi Fang
|
Combining p-values for dependent tests with heavy-tailed distributions
|
|
2020/10/06
|
Yujia Li
|
Literature review of tools for tumor-infiltrating immune cell proportion quantification
|
|
2020/09/29
|
Xiangning Xue
|
Literature review of circadian analysis on gene expression data (Cosiner and Spectral anlysis)
|
|
2020/09/22
|
Wei Zong
|
Latent Simplex Position Model: High Dimensional Multi-view Clustering with Uncertainty Quantification
|
|
2020/09/15
|
Jian Zou
|
Congruence analysis of cell lines and mouse models without replicates
|
|
2020/09/08
|
Peng Liu
|
Value Function Guided Subgroup Identification in Randomized Trials via Gradient Tree Boosting for multiple endpoints
|
|
2020/09/01
|
Yusi Fang
|
AFp2: Optimal detection of signals under multiple scenarios
|
|
2020/04/14
|
Jian Zou
|
Evaluation of Adaptive Fisher and AW Fisher
|
|
2020/04/07
|
Xiangning Xue
|
Semi-supervised learning on sount data
|
|
2020/03/31
|
Yujia Li
|
AW-Fisher and adaptive Fisher method in multivariate outcome application.
|
|
2020/03/23
|
Wei Zong
|
Literature review: Multi-tissue Multi-individual Clustering Using Tensor Decomposition.
|
|
2020/03/16
|
Yusi Fang
|
Combining P-values for Dependent Tests with Heavy-tailed Distributions.
|
|
2020/03/20
|
Peng Liu
|
Outcome-guided clustering with updated robust regression.
|
|
2020/03/03
|
Jian Zou
|
Literature review: Cross-study Replicability in Cluster Analysis.
|
|
2020/02/25
|
Xiangning Xue
|
Literature review: Consensus Subtyping in Colorectal Cancer.
|
|
2020/02/18
|
Yujia Li
|
Literature review: Gene Regulartory Network.
|
|
2020/02/11
|
Wei Zong
|
Literature review: Low-rank Tensor Constrained Multiview Subspace Clustering.
|
|
2020/02/04
|
Yusi Fang
|
Literature review: Standardized Partial Sums and Products of P-values & Tests Alternative to Higher Criticism for High-dimensional Means under Sparsity and Column-wise Dependence.
|
|
2020/01/21
|
Peng Liu
|
Literature review: Survival-based Bayesian Clustering.
|
|
2020/01/14
|
Yujia Li
|
Literature review: Bipartite Tight Spectral Clustering(BiTSC) for Identifying Conserved Gene Co-clusters in Two Species.
|
|
2019/12/13
|
Wei Zong
|
Literature review: Multi-view Clustering Methods.
|
|
2019/12/06
|
Yusi Fang
|
Detection of sparse, weak and heterogeneous signals.
|
|
2019/11/22
|
Peng Liu
|
Literature Review: Methods to integrate high-throughput omics data (Tensor regression).
|
|
2019/11/01
|
Wei Zong
|
Literature Review: Pathway analysis and comaprative studies.
|
|
2019/10/18
|
Yujia Li
|
Literature Review: Screening methods.
|
|
2019/10/11
|
Yusi Fang
|
Literature Review: Higher criticism for detecting sparse heterogeneous mixtures.
|
|
2019/10/04
|
Peng Liu
|
Literature Review: ADMM algorithm
|
|
2019/09/27
|
Wei Zong
|
Robust Order-based Machine Learning (ROML)
|
|
2019/09/20
|
Yujia Li
|
Literature Review: Semi-supervised learning (penalized Gaussian mixture model, Self-training, Co-training)
|
|
2019/09/13
|
Yusi Fang
|
Meta-analysis method by combining m-top p-values
|
|
2019/09/06
|
Peng Liu
|
Outcome guided disease subtyping for high dimensional omics data
|
|
2019/4/11, 2019/4/25, 2019/5/9
|
Department of Biostatistics
|
"A world beyond p < .05": discussion and literature review of papers relating to the use of the p-value, as well as potential alternatives to the p-value in scientific research.
|
|
2019/3/28
|
Yusi Fang
|
Literature Review: BayICE
|
|
2019/3/21
|
Tanbin Rahman
|
Sparse Negative binomial classifier for RNA-seq data with covariate adjustment
|
|
2019/3/7
|
Wei Zong
|
Literature Review: Meta-analysis of the human brain transcriptome identifies heterogeneity across human AD coexpression modules robust to sample collection and methodological approach
|
|
2019/2/28
|
Li Zhu
|
Literature Review: Semi-supervised clustering methods
|
|
2019/2/21
|
Peng Liu
|
Disease subtyping
|
|
2019/2/14
|
Kelly Cahill
|
Literature Review of existing TSP + machine learning methods
|
|
2019/2/7
|
Yujia Li
|
Simultaneous estimation of number of clusters and feature sparsity in clustering high dimensional data using resampling methodsoplet-based single cell transcriptomic data from population studies
|
|
2019/1/31
|
Yusi Fang
|
Literature Review: DIMM-SC: A Dirichlet mixture model for clustering droplet-based single cell transcriptomic data & BAMM-SC: A Bayesian mixture model for clustering droplet-based single cell transcriptomic data from population studies
|
|
2019/1/24
|
Tanbin Rahman
|
Sparse Negative binomial classifier for RNA-seq data with covariate adjustment
|
|
2018/12/4
|
Kelly Cahill
|
Nonparametric feature selection and robust classification for accurate inter-study prediction of categorical and continuous outcomes.
|
|
2018/11/27
|
Huang Lin
|
Introduction to Microbiome Analysis
|
|
2018/11/13
|
Tanbin Rahman
|
Sparse Classification for RNA seq data with covariate adjustment
|
|
2018/10/23
|
Yujia Li
|
Bayesian model based clustering with feature selection
|
|
2018/10/23
|
Yusi Fang
|
Semi-supervised clustering for single cell RNAseq data
|
|
2018/10/9
|
Li Zhu
|
Bayesian clustering with multi-layer overlapping group structure
|
|
2018/10/2
|
Peng Liu
|
MethylSeqDesign: A framework for Methyl-Seq genome-wide power calculation and study design issues
|
|
2018/9/25
|
Kelly Cahill
|
A simulation study for binary and multi-class prediction using top scoring pairs in conjunction with random forest trees
|
|
2018/9/18
|
Yujia Li
|
Simultaneous estimation of number of clusters and feature selection in clustering high-dimensional data using resampling methods.
|
|
2018/9/11
|
YuSi Fang
|
Apply adaptive weighted fisher statistic in testing association between clinical outcomes and biomarker.
|
|
2018/9/4
|
Lu, Han-jun
|
Bayesian inference in feature selection and clustering for RNA sequence count data.
|
|
2018/9/4
|
Huang, Hsin-En
|
sparse Negative Binomial Linear Discriminant Analysis for RNAseq data.
|
|
2018/8/28
|
Tanbin Rahman
|
Sparse Negative Binomial model-based clustering for RNA-sequence count data.
|
|
2018/8/21
|
Li Zhu
|
Bayesian indicator variable selection model for multi-layer overlapping groups in multi-omics application.
|
|
2018/8/14
|
Peng Liu
|
AW Fisher method and extensions.
|
|
2018/8/7
|
Kelly Cahill
|
Top Scoring Pairs + Machine learning methods for binary classification.
|
|
2018/1/16
|
George C. Tseng
|
Lab overview.
|
|
2017/12/11
|
Tanbin Rahman
|
Clustering for Count data with application to RNA sequence data.
|
|
2017/11/28
|
Peng Liu
|
Apply AW Fisher method in testing association between clinical outcomes and biomarkers..
Download (Protected file for internal use)
|
|
2017/11/21
|
Tianzhou (Charles) Ma
|
Job talk practice.
|
|
2017/11/14
|
Shyamal D Peddada
|
Rhythmic signals related to human microbiome.
|
|
2017/11/7
|
Kelly Cahill
|
Top scoring pairs for feature selection in machine learning and applications to cancer outcome prediction
|
|
2017/11/1
|
Li Zhu
|
Introduction of basic knowledge of deep neural network
|
|
2017/10/24
|
Tianzhou (Charles) Ma
|
Overview of diffusion MRI (dMRI) projects
|
|
2017/10/17
|
Tanbin Rahman
|
Model based Clustering for RNA sequence data,
Download (Protected file for internal use)
|
|
2017/9/26
|
Peng Liu
|
Exome sequencing analysis
Download (Protected file for internal use)
|
|
2017/9/19
|
Kelly Cahill
|
Nonparametric feature selection and robust classification for accurate inter-study prediction of binary outcomes.
|
|
2017/7/20
|
An-shun Tai
|
Zero-inflated negative binomial mixed regression for detecting transcriptional changes in single-cell RNA sequencing data.
|
|
2017/4/28
|
Zhiguang (Caleb) Huo
|
Adaptively weighted Fisher's method.
|
|
2017/4/21
|
Tianzhou (Charles) Ma
|
Meta-screening and meta-regularization.
|
|
2017/4/14
|
Li Zhu
|
Extend Bayesian variable selection method for multi-layer overlapping groups to clustering.
|
|
2017/4/7
|
Shuchang (Silvia) Liu
|
Dissertation defense Rehearsal: Genomic integrative analysis to improve fusion transcript detection, liquid association and biclustering
|
|
2017/3/31
|
Tanbin Rahman
|
Clustering of Count data with application to RNA sequence data
|
|
2017/3/24
|
Zhou(Ark) Fang
|
Integrative Multi-Omics Analysis - A Bayesian Framework Inspired by iBAG with Missingness Handling
|
|
2017/3/17
|
An-shun Tai
|
Inferring evolution structure based on copy number aberration from head and neck cancer via two-way mixture Poisson model
|
|
2017/3/3
|
Peng Liu
|
Power Calculation for DNA methylation study design and analysis
Download (Protected file for internal use)
|
|
2017/2/17
|
Kelly Cahill
|
A robust model for molecular age prediction using top scoring pairs
Download (Protected file for internal use)
|
|
2017/2/3
|
Chien-Wei (Masaki) Lin
|
Job Talk Practice
|
|
2017/1/20
|
Zhiguang Huo(Caleb)
|
Meta-analytic and integrative framework for sparse K-means to identify disease subtypes
|
|
2016/12/6
|
Chien-Wei Lin (Masaki)
|
Proposal Practice
|
|
2016/11/1
|
Shuchang Liu (Silvia)
|
Horizontal meta-analysis to detect biclusters by plaid model
|
|
2016/10/25
|
Zhou Fang (Ark)
|
Bayesian Framework for Integrative Omics Analysis with Missing Covariates Data
Download (Protected file for internal use)
|
|
2016/10/11
|
Tianzhou Ma (Charles)
|
Identification of stable functional modules from GGM-constructed network (mainly review)
Download (Protected file for internal use)
|
|
2016/10/4
|
Tanbin Rahman
|
Cross-species Gene Expression Analysis:Resemblance between Human and mice models
Download (Protected file for internal use)
|
|
2016/9/27
|
Zhiguang Huo (Caleb)
|
Integrative Sparse K-means for disease subtype discovery
Download (Protected file for internal use)
|
|
2016/9/13
|
Chien-Wei Lin (Masaki)
|
SeqDesign: A framework for RNA-Seq genome-wide power calculation and experimental design issues
Download (Protected file for internal use)
|
|
2016/8/26
|
Anche Kuo
|
Shiny tutorial and MetaOmics coding structure
Download (Protected file for internal use)
|
|
2016/8/19
|
Li Zhu
|
Bayesian hierarchical model for multi-level overlapping group structure (MOG)
Download (Protected file for internal use)
|
|
2016/8/12
|
Zhou Fang (Ark)
|
Bayesian Framework for Integrative Omics Analysis with Missing Covariates Data
Download (Protected file for internal use)
|
|
2016/8/5
|
Tianzhou Ma (Charles)
|
Bayesian latent variable model for integrating microarray and RNA-seq transcriptomic data
Download (Protected file for internal use)
|
|
2016/7/22
|
Tanbin Rahman
|
Cross-species Gene Expression Analysis: Resemblance between Human and mice models
Download (Protected file for internal use)
|
|
2016/7/15
|
Zhiguang Huo (Caleb)
|
Bayesian non-parametric latent hierarchical model for transcriptomic meta-analysis to detect biomarkers with clustered meta-patterns of differential expression signals
Download (Protected file for internal use)
|
|
2016/3/1
|
Li Zhu
|
Bayesian sparse group lasso
Download (Protected file for internal use)
|
|
2016/2/23
|
Zhou Fang (Ark)
|
Bayesian Framework for Integrative Omics Analysis with Missing Covariates Data
Download (Protected file for internal use)
|
|
2016/2/16
|
Tianzhou Ma (Charles)
|
Cross-platform meta-analysis of microarray and RNA-seq
Download (Protected file for internal use)
|
|
2016/2/9
|
Shuchang Liu (Silvia)
|
Horizontal meta-analysis to detect biclusters by plaid model
Download (Protected file for internal use)
|
|
2016/2/2
|
Tanbin Rahman
|
Cross-species Gene Expression Analysis:Resemblance between Human and mice models
Download (Protected file for internal use)
|
|
2016/1/26
|
Lin Wang
|
Meta analysis for liquid association
Download (Protected file for internal use)
|
|
2016/1/19
|
Zhiguang Huo (Caleb)
|
Biomarker categorization and fast computing of adaptively weighted Fisher's method for meta-analysis in omics applications
Download (Protected file for internal use)
|
|
2016/1/12
|
Chien-Wei Lin (Masaki)
|
Genetic Modulation of Brain Molecular Aging
Download (Protected file for internal use)
|
|
2015/12/11 (Fri)
|
Li Zhu
|
Bayesian group lasso and approximate inference
Download (Protected file for internal use)
|
|
2015/11/20 (Fri)
|
Zhou Fang (Ark)
|
Hidden Markov Model(HMM) and Sequential Importance Sampling(SIS) for imputation, phasing, and genotype calling
Download (Protected file for internal use)
|
|
2015/11/13 (Fri)
|
Tianzhou Ma (Charles)
|
Bayesian cross-platform meta-analysis of microarray and RNA-seq
Download (Protected file for internal use)
|
|
2015/11/6 (Fri)
|
Shuchang Liu (Silvia)
|
Targeted fusion breakpoint detection from WGS data and duplicate reads detection from NGS data
Download (Protected file for internal use)
|
|
2015/10/30 (Fri)
|
Zhiguang Huo (Caleb)
|
Integrative Sparse K-means for disease subtype discovery
Download (Protected file for internal use)
|
|
2015/10/23 (Fri)
|
Chien-Wei Lin (Masaki)
|
Genetic Modulation of Brain Molecular Aging
Download (Protected file for internal use)
|
|
2015/10/9 (Fri)
|
Li Zhu
|
Meta-analysis Framework for Differential Coexpression Module Detection (MetDiffNetwork)
Download (Protected file for internal use)
|
|
2015/10/2 (Fri)
|
Zhou Fang (Ark)
|
A Bayesian Framework for Two Way Integrative Analysis on Two Tissue Asthma Data
Download (Protected file for internal use)
|
|
2015/09/25 (Fri)
|
Tianzhou Ma (Charles)
|
Integrative analysis of multi-omics data across multiple cancer types
Download (Protected file for internal use)
|
|
2015/09/18 (Fri)
|
Shuchang Liu (Silvia)
|
Extending plaid model to detect biclusters in horizontal meta-analysis framework
Download (Protected file for internal use)
|
|
2015/09/11 (Fri)
|
Zhiguang Huo (Caleb)
|
Single Cell Methylation
Download (Protected file for internal use)
|
|
2015/09/04 (Fri)
|
Chien-Wei Lin (Masaki)
|
Overview of the Integration Between Neuroimaging and Genetics
Download (Protected file for internal use)
|
|
2015/08/25 (Tue)
|
Group Project Overview
|
Adaptive weight Fisher and 12 other presentations
Download (Protected file for internal use)
|
|
2015/04/23 (Thu)
|
Qi Yan
|
Region-based Association Tests for DNA Methylation Data
|
|
2015/04/10 (Fri)
|
Zhiguang Huo
|
Bayesian Latent model for omics meta analysis for idientifying consensus and study-specific biomarkers
Download (Protected file for internal use)
|
|
2015/03/27 (Fri)
|
Tianzhou Ma
|
Bayesian hierarchical model for the meta-analysis of RNAseq
Download (Protected file for internal use)
|
|
2015/03/20 (Fri)
|
Chien-Wei Lin & SungHwan Kim
|
1. Consensus and differential GO pathway analysis and visualization when multiple transcriptomic studies or conditions are jointly analyzed, 2. A meta-analysis framework for principal component analysis
Download (Protected file for internal use)
|
|
2015/03/03 (Tue)
|
Qi Yan & Ting Wang
|
1. Rare-Variant Kernel Machine Test for Longitudinal Data for Population and Family Samples, 2. A fast package of constructing conditional Gaussian graphical model for a large number of variables
|
|
2015/02/27 (Fri)
|
Zhou Fang(Ark)
|
Plaid Model and Its Extension for MetaBiclustering
Download (Protected file for internal use)
|
|
2015/02/06 (Fri)
|
Chien-Wei Lin
|
Consensus and differential GO pathway analysis and visualization when multiple transcriptomic studies or conditions are jointly analyzed
Download (Protected file for internal use)
|
|
2015/01/30 (Fri)
|
Shuchang Liu
|
RNA methylation analysis by RNA-seq and m6A-seq
Download (Protected file for internal use)
|
|
2015/01/23 (Fri)
|
Tianzhou Ma & Zhiguang Huo
|
1. Bayesian hierarchical model for the meta-analysis of RNAseq, 2.Bayesian method for differential expressed genes of meta analysis
Download (Protected file for internal use)
|
|
2015/01/16 (Fri)
|
George Tseng
|
Annual lab overview and future directions
Download (Protected file for internal use)
|
|
2014/12/15 (Mon)
|
Ting Wang & Qi Yan
|
(1) An evaluation of Normalization Approaches for Illumina Infinium 450K Methylation Data (2) Effects of sequencing errors on family-based association tests for rare variants
|
|
2014/12/09 (Tue)
|
Tianzhou Ma
|
Bayesian hierarchical model for the meta-analysis of RNAseq
Download (Protected file for internal use)
|
|
2014/12/02 (Tue)
|
Zhou Fang (Ark)
|
Sparse K-means clustering and Gaussian Mixture Model (GMM)
Download (Protected file for internal use)
|
|
2014/11/25 (Tue)
|
Rui Chen
|
Comparative study of two Meta-gene-clustering approaches for co-regulated expression identification
Download (Protected file for internal use)
|
|
2014/11/18 (Tue)
|
Shuchang Liu & Chien-Wei Lin
|
Joint group meeting with Wei Chen's group @GSPH
Download (Protected file for internal use)
|
|
2014/11/11 (Tue)
|
Zhiguang Huo
|
Bayesian method for differential expressed genes of meta analysis
Download (Protected file for internal use)
|
|
2014/11/04 (Tue)
|
SungHwan Kim
|
A meta-analysis framework for sparse principal component analysis
Download (Protected file for internal use)
|
|
2014/10/27 (Mon)
|
Qi Yan & Yi Liu
|
(1) Kernel Machine Regression for Multivariate Quantitative Phenotype in Family Samples (2) Comparison study of multivariate survival models
|
|
2014/10/21 (Tue)
|
Tianzhou Ma
|
How much can mouse models predict human disease on a molecular basis: from differential expression to pathway analysis
Download (Protected file for internal use)
|
|
2014/10/07 (Tue)
|
Chien-Wei Lin
|
SeqDEsign: a framework for Genome-wide power calculation and design issues in RNA-Seq Experiment
Download (Protected file for internal use)
|
|
2014/09/30 (Tue)
|
Rui Chen
|
Comparative study of two Meta-gene-clustering approaches for co-regulated expression identification.
Download (Protected file for internal use)
|
|
2014/09/23 (Tue)
|
Shuchang Liu
|
A comprehensive evaluation of fusion transcript detection algorithms in pair-end RNA-Seq data
Download (Protected file for internal use)
|
|
2014/09/16 (Tue)
|
Zhiguang Huo & SungHwan Kim
|
Joint group meeting with Wei Chen's group @GSPH
Download (Protected file for internal use)
|
|
2014/09/02 (Tue)
|
Tianzhou Ma
|
Unified fixed and random effect model and their adaptive-weighted versions for the meta-analysis of RNAseq
Download (Protected file for internal use)
|
|
2014/04/24
|
Chien-Wei Lin
|
Thresholding adaptive weighting methods for identifying concordant differentially expressed genes in omics meta-analysis
Download (Protected file for internal use)
|
|
2014/04/17
|
Serena Liao
|
SeqDEsign: A novel power calculation method for candidate marker detection in RNA-seq experiment
Download (Protected file for internal use)
|
|
2014/04/03
|
Rui Chen
|
Proposal rehearsal
Download (Protected file for internal use)
|
|
2014/03/27
|
Lun-Ching Chang
|
Job talk rehearsal
|
|
2014/03/20
|
Zhiguang Huo
|
Sparse Gaussian Mixture Model
Download (Protected file for internal use)
|
|
2014/02/27
|
|
ENAR rehearsal
|
|
2014/02/20
|
Cho-Yi Chen
|
Analysis of MicroRNA Regulatory Network and 3'UTRome
Download (Protected file for internal use)
|
|
2014/02/13
|
Shaowu Tang
|
Job talk rehearsal
Download (Protected file for internal use)
|
|
2014/02/06
|
Ding Ying
|
Job talk rehearsal
Download (Protected file for internal use)
|
|
2014/01/30
|
Lun-Ching Chang
|
Analysis of Family-based Sequence Data
Download (Protected file for internal use)
|
|
2014/01/16
|
SungHwan Kim
|
Group structured integrative clustering for identifying coherent samples in inter-related multiple genomic data sets
Download (Protected file for internal use)
|
|
2014/01/09
|
George Tseng
|
Annual lab overview
Download (Protected file for internal use)
|
|
2013/12/09
|
Ding Ying
|
Meta-network analysis for gene coexpression
|
|
2013/11/25
|
Rui Chen
|
ChIP-seq Meta-Caller: An assembly method to combine multiple ChIP-seq peak callers to identify and reprioritize the peaks
|
|
2013/11/18
|
Serena Liao
|
A mixture model approach for sample size and power calculation in RNAseq data
|
|
2013/11/11
|
Shaowu Tang
|
Imputation of truncated p-values for meta-analysis methods and its genomic application
|
|
2013/11/04
|
Chien-Wei Lin
|
An interactive visualization tool for biological pathway with an emphasis on overlapping structure
|
|
2013/10/28
|
Zhiguang Huo
|
Meta-analysis sparse K-means framework for disease subtype discovery when combining multiple transcriptomic studies
|
|
2013/10/21
|
Lun-Ching Chang
|
Analysis of Family-based Sequence Data
|
|
2013/9/9
|
SungHwan Kim
|
Double-penalized integrative clustering for identifying stable and coherent samples in multiple genomic data sets
|
|
2013/8/26
|
Ding Ying
|
Dissertation Rehearsal
|
|
2013/8/20
|
Rui Chen
|
Somatic Point Mutation Detection on Prostate Cancer Samples
|
|
2013/8/13
|
Serena Liao
|
Missing value imputation in high dimensional phenome data
|
|
2013/7/30
|
Shaowu Tang
|
|
|
2013/3/5
|
Xiaojing Zheng
|
A review of my research work
|
|
2013/2/26
|
Zhiguang Huo
|
Meta-analysis framework of sparse K-means for disease subtype discovery
|
|
2013/2/19
|
Lun-Ching Chang
|
Molecular brain aging and genetic modulation
|
|
2013/2/12
|
SungHwan Kim
|
Integrative Phenotyping Framework (iPF): Integration of Phenomic and Genomic Data
|
|
2013/2/5
|
Ying Ding
|
Bias correctioin in the selection of minimal-error classifier from many machine learningmodels.
|
|
2013/1/29
|
Wei Chen
|
A Sketch of My Methodological and Applied Genetic Research
|
|
2013/1/22
|
Rui Chen
|
Meta-ChIP-seq Project in Comparing and Combining Peak Callers
|
|
2013/1/15
|
George C. Tseng
|
Annal lab summary and Plan for research
|
|
2012/12/11
|
Daniel E. Weeks
|
Practical Challenges in Applied Statistical Genetics Research
|
|
2012/12/04
|
Shaowu Tang
|
Investigation on adaptively weighted evidence aggregation meta-analysis methods
|
|
2012/11/27
|
Cancel Group Meeting
|
|
|
2012/11/20
|
Xingbin Wang
|
Data Adaptively Weighted Association Test Method for Rare Variant Detection
|
|
2012/11/13
|
Eleanor Feingold
|
A much more informal than it looks talk on my research
|
|
2012/11/06
|
Serena Liao
|
Methylation events in aging as drivers of breast cancer tumorgensis
|
|
2012/10/30
|
Hurricane Sandy Break
|
|
|
2012/10/23
|
Zhiguang Huo
|
Framework of Meta Sparse KMeans
|
|
2012/10/16
|
Lun-Ching Chang
|
Molecular Evidence for a
Dimensional Basis of Depression
|
|
2012/10/02
|
Sunghwan Kim
|
A meta-analysis framework for
principal component analysis: with applications to combining multiple transcriptomic studies
|
|
2012/09/25
|
Kui Shen
|
Epigenomic Regulation of Gene Expression in Diet Induced Obesity
|
|
2012/09/18
|
Ying Ding
|
Bias correction in the selection of
minimal-error classifier from many machine learning models.
|
|
2012/09/11
|
Rui Chen
|
NGS analysis on Methylation and RNA-seq
Data of Prostate Cancer
|
|
2012/08/24
|
Shaowu
|
Investigations on the bias of minimal error rate induced by
optimal classifier selection algorithm in microarray data analysis
(theoretical results)
|
|
2012/08/17
|
Serena Liao
|
Missing value imputation in phenome data
|
|
2012/04/16
|
Lun-Ching
|
Molecular brain aging: genetic modulation and functional outcomes
|
|
2012/04/09
|
Sunghwan
|
TSP with Housekeeping
Gene
|
|
2012/04/02
|
|
ENAR meeting 2012 (Washington DC)
|
|
2012/03/26
|
|
ENAR rehearsal
|
|
2012/03/19
|
|
CMU statistics seminar
|
|
2012/03/12
|
Ying Ding
|
Meta-analysis for
combining multiple
relevant regulatory
networks
|
|
2012/02/27
|
Chi Song
|
Robust Meta-analysis
Methods for Genomic Studies
|
|
2012/02/13
|
Shaowu
|
Imputation of truncated
p-values for order statistics meta-analysis methods
|
|
2012/02/06
|
Ge Liao
|
Missing value
imputation for phenome data
|
|
2012/01/30
|
Lun-Ching
|
Comprehensive
comparative microarray meta-analysis methods
|
|
2012/01/23
|
Sunghwan
|
TSP with Housekeeping
Gene
|
|
2012/01/09
|
George
|
Project review by
person
|
|
2011/12/02
|
George
|
Intro of academic career
|
|
2011/11/18
|
Ying Ding
|
Regularity network
analysis by meta-analysis of multiple transcriptomic
studies in major depressive disorder
|
|
2011/11/11
|
Chi Song
|
Logistic Mixture Model for Meta-analysis
|
|
2011/10/14
|
Shaowu
|
Combining p-values by
Stouffer and Fisher's methods when p-values censored in partial studies
|
|
2011/09/30
|
Ge Liao
|
Extending K-nearest
neighbor imputation to phenotype data
|
|
2011/09/23
|
Lun-Ching
|
Comparative study of
microarray meta-analysis
|
|
2011/09/16
|
Ying Ding
|
Principles and
challenges of genomewide DNA methylation
analysis
|
|
2011/09/09
|
Chi Song
|
IPOD and Module-based MDS
|
|
2011/09/02
|
Shaowu
|
Combining p-values by
Stouffer and Fisher's methods when p-values censored in partial studies
|
|
2011/08/22
|
Ge Liao
|
Extend K-Nearest
Neighbor imputation to phenotype data
|
|
2011/08/15
|
Lun-Ching
|
Comparative study of
microarray meta-analysis
|
|
2011/03/28
|
Lun-Ching
|
MDD project
|
|
2011/03/21
|
Shaowu
|
Extending Fisher?s
method for meta-analysis when partial p-value information is available
|
|
2011/02/28
|
Don
|
Meta Sparse PCA
|
|
2011/02/21
|
Chuck
|
Paper review
|
|
2011/02/14
|
Shaowu
|
Extending Fisher?s
method for meta-analysis when partial p-value information is available
|
|
2011/02/07
|
Xingbin
|
Meta-regression
|
|
2011/01/31
|
Lun-Ching
|
LOHAS paper
|
|
2011/01/24
|
Don
|
Meta-PCA
|
|
2011/01/17
|
Dr. George
|
Project overview and
looking forward to 2011
|
|
2010/12/20
|
Chuck
|
Paper review: An
integrated analysis of molecular aberrations in NCI-60 cell lines. BMC bioinfo 2010
|
|
2010/12/06
|
Lun-Ching
|
Synergizing transcriptome and genome-wide association studies in
depression and other neuropsychiatric disorders
|
|
2010/11/29
|
|
No meeting today:
Thanksgiving break
|
|
2010/11/22
|
Xingbin
|
Rehearsal of the
proposal
|
|
2010/11/12
|
Don
|
Statistical issues in combining
multiple genomic studies: quality assessment, dimension reduction and
integration of transcriptomic and phenomic data
|
|
2010/11/8
|
Chuck
|
Paper review:
Next-generation genomic an integrative approach
|
|
2010/11/1
|
Xingbin
|
Two stage Meta-Analysis
for MDD
|
|
2010/10/25
|
Lun-Ching
|
Synergizing transcriptome and genome-wide association studies in
depression and other neuropsychiatric disorders
|
|
2010/10/18
|
Don
|
Integrative quality
control for genomic microarray analysis
|
|
2010/10/03
|
Chuck
|
r-th
ordered P-value for meta-analysis
|
|
2010/09/27
|
Group meeting
|
Discuss meat-analysis
data sets
|
|
2010/09/20
|
Xingbin
|
MDD data sets
|
|
2010/09/13
|
Don
|
Weighted meta-analysis
|
|
2010/08/30
|
Chuck
|
Rth rank
|
|
2010/08/23
|
Xingbin
|
Meta-analysis on
Depression microarray studies
|
|
2010/08/16
|
Don
|
Meta-analysis: pathway
weighting method
|
|
2010/08/09
|
Xingbin
|
Paper review
|
|
2010/07/12
|
Don
|
Meta-cluster
|
|
2010/06/30
|
Xingbin
|
Meta-analysis: Random intercept
model
|
|
2010/03/24
|
Don
|
Meta PCA
|
|
2010/03/17
|
Chuck
|
Survival analysis
project and method review
|
|
2010/02/24
|
Xingbin
|
EVC based on Rank
correlation
|
|
2010/02/17
|
Don
|
Clustering of variables
|
|
2010/02/03
|
Chuck
|
Paper review
|
|
2010/01/27
|
Xingbin
|
Application of EVC in
real data sets
|
|
2010/01/20
|
Don
|
?/span>Meta FDA
|
|
2010/01/13
|
Chuck
|
Rth rank method
|
|
2010/01/06
|
George
|
Review of projects and
papers
|
|
2009/12/14
|
Xingbin
|
Meta-analysis on Depression
(Human and mouse)data sets
|
|
2009/11/30
|
Don
|
Meta FDA(II)
|
|
2009/11/23
|
Chuck
|
An analysis of cancer
data
|
|
2009/11/16
|
Xingbin
|
Application of EVC
|
|
2009/11/09
|
Jiawei
|
Partial least
square?Theorem and Algorithm
|
|
2009/11/02
|
Don
|
Meta-FDA
|
|
2009/10/19
|
Chuck
|
The next generation
|
|
2009/10/05
|
Xingbin
|
Asymptotic property of
EVC estimator
|
|
2009/09/28
|
Don
|
Meta-analysis for
integrated data exploratory tools
|
|
2009/08/31
|
Chuck
|
Generalized Singular Value
Decomposition (GSVD)
|
|
2009/08/27
|
Xingbin
|
EVC: Inferring the True
correlation of Cross-Species Microarray Data
|
|
2009/08/20
|
Don
|
Meta-Clustering &
Meta-PCA
|
|
2009/08/13
|
Kui
|
Defense rehearsal
|
|
2009/07/30
|
Chuck
|
Cell Cycle Paper Review
|
|
2009/07/23
|
Kui
|
Defense rehearsal
|
|
2009/07/16
|
Xingbin
|
ABO: Asymptotically Bahadur Optimal Property of OW method
|
|
2009/07/09
|
Shuya
|
Defense rehearsal
|
|
2009/6/11
|
Sunghee
|
Defense rehearsal
|
|
2009/6/4
|
Shuya
|
6/4 R PACKAGES FOR DATA
QUALITY EVALUATION AND RETRIEVAL OF MICROARRY STUDIES
|
|
2009/5/28
|
Chuck
|
Paper review:
Sunita R. Setlur et al. 2007
Sridhar Ramaswamy et al. 2002
|
|
2009/5/14
|
Kui
|
Combining multiple microarray
studies for improved pathway analysis
|
|
2009/5/7
|
Xingbin
|
Asymtotically Optimal Methods of Combining Tests
|
|
2009/4/28
|
Sunghee
|
Effects of missing
value imputation on down-stream analyses in microarray data
|
|
2009/4/21
|
Chuck
|
GSEA algorithm
|
|
2009/4/13
|
Shuya
|
R function for merging
microarray data sets and Data quality control
|
|
2009/3/23
|
Kui
|
Combining multiple
microarray studies for improved pathway analysis
|
|
2009/3/16
|
Xingbin
|
Asymtotically Optimal Methods of Combining Tests
|
|
2009/3/2
|
Sunghee
|
The effects of missing
value imputation on down-stream analyses of microarray data
|
|
2009/2/2
|
Chuck
|
Tight Clustering R
package
|
|
2009/1/26
|
Shuya
|
Data collection package
and biomarkers detection for a real cancer data.
|
|
2009/1/12
|
Kui
|
Combining multiple
microarray studies for improved pathway analysis
|
|
2009/1/5
|
George
|
Overview the projects
and research direction
|
|
2008/12/15
|
Xingbin
|
Estimating the true correlation
in a contaminated bivariate Gaussian model: via extreme value correlation
|
|
2008/12/8
|
Sunghee
|
Rehearsal for proposal
|
|
2008/11/17
|
Kui
|
Combining multiple
microarray studies for improved pathway analysis
|
|
2008/11/10
|
Shuya
|
Review paper:
Large-scale meta-analysis of cancer microarray data identifies common
transcriptional profiles of neoplastic transformation and progrssion Rhodes DR et al.(2004)PNAS.
Detecting common gene expression pattens in
multiple cancer outcome entities. Yang X et al.(2005)Biomedical
Microdevices.
|
|
2008/11/03
|
Chuck
|
Rearranged Ions in Mass
Spectrometry Research
|
|
2008/10/27
|
Sunghee
|
Effects of missing
imputation on various down-stream analyses in microarray experiments
|
|
2008/10/20
|
Xingbin
|
Estimating the true
correlation in a contaminated bivariate Gussian
model via extreme value correlation
|
|
2008/10/06
|
Zhibao
|
Dimension Reduction and
Robust Classification Models in the Disease Prediction by Genomic and
Cell-based Assays
|
|
2008/09/29
|
Kui
|
Review paper:
Meta- and Gene set analysis of stomach cancer gene expession
data,Seon-Young Kim et al., Mol. Cells, Vol.24,
No.2, p.200-209
|
|
2008/09/22
|
Shuya
|
Biomarker Detection
methods when combining multiple multi-class mircoarrays
studies
|
|
2008/09/15
|
Xingbin
|
Estimating the true
correlation in a contaminated bivariate Gaussian model:via
extreme value correlation
|
|
2008/09/08
|
Sunghee
|
The effects on
identifying the significant genes to various MVs imputation methods
|
|
2008/09/02
|
Kui
|
Rehearsal for proposal
|
|
08/8/25
|
Kui
|
Combining multiple
microarray studies for improved pathway analysis
|
|
08/8/18
|
Shuya
|
Identifying Biomarkers
of Concordant Patterns in the Meta-Analylsis of
multilple multi-class microarray studies
|
|
08/8/11
|
Sunghee
|
The effects on
identifying the significant genes to various missing values(MVs)
imputation methods
|
|
08/8/05
|
Xingbin
|
Estimating the true
correlation in a contaminated bivariate Gaussian model:via
extreme value correlation
|
|
08/7/28
|
Zhibao
|
MBP Project Update
|
|
08/6/30
|
Kui
|
Identifying alternative
pathway using Fisher Exact Test
|
|
08/6/23
|
Shuya
|
Review paper:
Regularized biomarker selection in mircroarray
meta-analysis,
Shuangge Ma et al,Technical
Report No.383
|
|
08/6/09
|
Sunghee
|
The effects on
identifying the significant genes to various missing values(MVs)
imputation methods
|
|
08/5/19
|
Zhibao
|
Module-based prediction
in microarray data(MBP)
|
|
08/5/12
|
Kui
|
Module Enrichment Meta-analysis
of Microarray Data
|
|
08/5/5
|
Shuya
|
Identifying biomarkers
of concordant correlated patterns across microarray studies
|
|
08/4/21
|
Sunghee
|
Review paper:
DNA microarray data imputation and significance analysis of differential expression,
Jornsten et al, Bioinformatics, p.4155-4161.
|
|
08/4/14
|
Zhibao
|
Rehearsal for proposal
|
|
08/4/07
|
Chunrong
|
Review paper:
Metagene projection for cross-platform, cross
species characterization of global transcriptional states,Tamayo
et al, PNAS, p.5959-5964.
|
|
08/3/24
|
NIH meeting
|
Group meeting cancelled
|
|
08/3/17
|
ENAR
|
Group meeting cancelled
|
|
08/3/10
|
Spring break
|
Group meeting cancelled
|
|
08/3/03
|
Jia
|
Review paper:
Pearson's Test in a Large Scale Multiple Meta-Anlysis,
Art B.Owen
|
|
08/2/25
|
Shuya
|
1.Identifying genes
with correlated patterns across studies
2.Review workshop from HBLS Bioinformatics:Protein
Information Hubs
|
|
08/2/18
|
Kui
|
A tutorial for making a
R package in Windows
|
|
08/2/11
|
Zhibao
|
Module based robust
prediction
|
|
08/2/04
|
Sunghee
|
Estimating the true
correlation in a contaminated bivariate Gaussian model : via extreme
value correlation
|
|
08/1/28
|
Kui
|
Multi-resolution
classification
|
|
07/11/20
|
Chunrong
Jia
|
rehearsal for proposals
|
|
07/11/13
|
Shuya
|
identifying correlated
genes across studies
|
|
07/11/6
|
Zhibao
|
module-based prediction
model
|
|
07/10/30
|
Jia
|
Meta-analysis of
microarray data
|
|
07/10/23
|
Chunrong
|
cross-platform
prediction
|
|
07/10/16
|
Sunghee
|
Correlation of extreme
values
|
|
07/10/2
|
Kui
|
Multi-resolution
clustering
|
|
07/9/25
|
Shuya
|
Review paper:
Optimized cross-study analysis of microarray based predictors,X.Zhong
et al.
|
|
07/9/18
|
Zhibao
|
module-based prediction
model
|
|
07/9/11
|
Jia
|
meta-analysis in
microarray
|
|
07/9/4
|
Chunrong
|
cross-dataset
prediction and improved DE gene detection method
|
|
07/8/27
|
Sunghee
|
extreme value correlation
and identify correlated genes across species
|
|
07/8/20
|
George
|
evolution of gene
identifiers and issues in gene matching across data sets
|
|
07/8/13
|
Kui Shen
|
improved tight
clustering/multi-resolution clustering
|
|
07/8/6
|
Sunghee
|
extreme value
correlation and identify correlated genes across species
|
|
07/7/16
|
Jia Li
|
meta-analysis in
microarray
|
|
07/7/9
|
Zhibao
|
robust prediction in
microarray
|
|
07/7/2
|
Chunrong
|
cross-dataset
prediction in microarray
|
|
07/5/18
|
Sunghee
|
The connectivity Map:
Using Gene-Expression Signatures to Connect Small Molecules, Genes and
Disease. Science. 2006
|
|
07/5/11
|
Chunrong
|
From signature to
models: understanding cancer using microarrays. Nature Genetics. 2005
|
|
07/5/4
|
Jia
|
A module map showing
conditional activity of expression modules in cancer. Nature Genetics.
2004
|
|
07/4/13
|
Sunghee
|
analysis on human and
mouse depression; simulation on extreme correlation
|
|
07/4/6
|
Zhibao
|
a robust prediction
method
|
|
07/3/30
|
Joshua
|
preparing microarray
data packages and annotations in Bioconductor
|
|
07/3/23
|
Jia
|
update on meta-analysis
project
|
|
07/2/16
|
Joshua
|
Review paper: Bayesian
models for pooling microarray studies with multiple sources of replications.
|
|
07/2/9
|
George
|
Quantile map: visualizing and summarizing patterns of
multiple distributions with Fisher information and empirical Bayes.
|
|
07/2/2
|
Chunrong
|
Review paper: Cross-platform
analysis of cancer microarray data improves gene expression based
classification of phenotypes.
|
|
07/1/26
|
Sunghee
|
Review paper:
Large-scale meta-analysis of cancer microarray data identifies common transcriptional
profiles of neoplastic transformation and progression.
|
|
07/1/19
|
Jia
|
Review paper:
Statistical issues and methods for meta-analysis of microarray data: a
case study in prostate cancer.
Meta-analysis ofmicroarrays: interstudy validation of gene expression profiles
reveals pathway dysregulation in prostate
cancer.
|
|
06/12/18
|
Jia
Sunghee
|
Review NBT MAQC paper:
Using RNA sample titrations to assess microarray platform performance and
normalization techniques.
review NBT MAQC paper: Evaluation of DNA
microarray results with quantitative gene expression platforms.
|
|
06/11/27
|
George
|
Statistical integrative
analysis of multiple expression profiles
review NAR paper (Chunrong): Evaluation of gene
expression measurements from commercial microarray platforms.
|
|
06/11/20
|
Zhibao
|
update on KNN.e imputation
review NBT MAQC paper (George): The MicroArray
Quality Control (MAQC) project shows inter- and intraplatform
reproducibility of gene expression measurements
|
|
06/11/06
|
Jia
|
gene selection in
classification of microarray data
|
|
06/10/30
|
Sunghee
|
Metastasis of ovarian
and endometrial cancer in expression profiles
|
|
06/10/16
|
Chunrong
|
Cross-organ classification
analysis on expression profiles of liver and prostate cancer
|
|
06/10/02
|
George
|
Selection of missing
value imputation methods in microarray
|
|
06/09/25
|
Jia
|
Increasingly exhaustive
gene/covariate selection
|
|
06/09/18
|
Chunrong
|
KNN-SAM
|
|
06/09/11
|
Zhibao
|
Correlation-based KNN
in missing value imputation
|
|
06/08/30
|
Sunghee
|
Analysis of human
depression data
|
|
06/08/03
|
Chunrong
|
Meta-analysis on
prostate and lung cancer data
|
|
06/07/13
|
George
|
Summary of all
projects. Penalized and weighted K-means.
|
